Equipe Mécanismes à l'Origine de la Biodiversité - OSUR ...

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Sep 29, 2013 (3 years and 11 months ago)

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Articles dans des revues avec comité de lecture (ACL)

Equipe Mécanismes à l’Origine de la Biodiversité
(Responsable : Malika.Ainouche@univ-rennes1.fr
)


2005

P1. Brugiere D., Fleury M.C., Colyn M. 2005. Structure of the squirrel community in the Forêt des
Abeilles, central Gabon: Rediscovery and revalidation of Funisciurus duchaillui Sanborn 1953.
Mammalia, 69(2), 223-231.
P2. Lecompte E., Nicolas V., Colyn M., Denys C., Volobouev V. 2005. Description of the
karyotype of Heimyscus fumosus and of several other murids from the Mount Doudou area
(Gabon). Belgian Journal of Zoology, 135(1), 21-25.
P3. Nicolas J., Durand P., Ranchy G., Tempel S., Valin A.S. 2005. Suffix-Tree Analyser (STAN):
looking for nucleotidic and peptidic patterns in genomes. Bioinformatics, 21(24), 4408-4410.
P4. Nicolas V., Barriere P., Colyn M. 2005. Seasonal variation in population and community
structure of Shrews in a tropical forest of Gabon. Journal of Tropical Ecology, 21(2), 161-169.
P5. Nicolas V., Verheyen E., Verheyen W., Dillen M., Akpatou B., Dudu A., Wendelen W., Colyn
M. 2005. A taxonomic revision of the African lowland rainforest species of the genus Praomys
from Central Africa (Rodentia, Muridae) based on molecular and craniometric data. Zoological
Journal of the Linnean Society, 145(4), 539-553.
P6. Nicolas V., Verheyen E., Verheyen W., Hulselmans J., Dillen M., Akpatou B., Dudu A.,
Wendelen W., Colyn M. 2005. Systematics of African lowland rainforest Praomys (Rodentia,
Muridae) based on molecular and craniometrical data. Zoological Journal of the Linnean
Society, 145(4), 539-553.
P7. Refoufi A., Esnault M.A., Levasseur J.E. 2005. Characterization of a novel hybrid 9-ploid
(2n=63) with four genomes in Elytrigia complex (Poaceae). Botanical Journal of the Linnean
Society, 147(4), 501-508.
P8. Salmon A., Ainouche M.L., Wendel J.F. 2005. Genetic and epigenetic consequences of
recent hybridization and polyploidy in Spartina (Poaceae). Molecular Ecology, 14(4), 1163-
1175.
P9.
HEULIN (B.), STEWART (J.R.), SURGET-GROBA (Y.), BELLAUD (P.), JOUAN
(F.), LANCIEN (G.), DEUNFF (J.), 2005. Development of the uterine shell glands
during the preovulatory and early gestation periods in oviparous and viviparous
Lacerta vivipara. Journal of Morphology, 93, 266-280.





2006

P1. Barriere P., Hutterer R., Nicolas V., Querouil S., Colyn M. 2006. Investigating the role of
historically isolated gallery forests outside the Congolese forest block as a refuge for African
forest shrews. Belgian Journal of Zoology, 135, 27-37.
P2. Charrier M., Fonty G., Gaillard-Martinie B., Ainouche K., Andant G. 2006. Isolation and
characterization of fermentative bacteria from the intestine of two edible snails, Helix pomatia
and Cantareus aspersus (Gastropoda: Pulmonata). Biological Research, 00, 00-00.
P3. Chenal C., Legue F., Nourgalieva K. 2006. Delayed effects of low level acute irradiation and
chronic environmental radioactive contamination on DNA lymphocytes of people living in
Dolon, a settlement located in the vicinity of the Semipalatinsk nuclear test site (Kazakhstan).
The Science of the Total Environment, 369(1-3), 91-98.
P4. Couee I., Sulmon C., Gouesbet G., El Amrani A. 2006. Involvement of soluble sugars in
reactive oxygen species balance and responses to oxidative stress in plants. Journal of
Experimental Botany, 57(3), 449-459.
P5. Denys C., Colyn M., Nicolas V. 2006. First record of the Dollman’s tree mouse (Prionomys
batesi; Mammalia: Nesomyidae) in the republic of Congo and additional description of this rare
Central African rodent. Zootaxa, 1318, 59-68.
P6. Durand P., Mahe F., Valin A.S., Nicolas J. 2006. Browsing repeats in genomes : Pygram and
an application to non-coding region analysis. BMC Bioinformatics, 7, 477 (17p).
P7. Mukinzi I., Kadange N., Bapeamoni A., Amundala D., Gembu T., Kaswera K., Danadu M.,
Gambalemoke M., Katuala P.G.B., Dudu A., Colyn M., Hutterer R. 2006. Preliminary data
collected on biodiversity of rodents and insectivores (Mammalia) in the periphery of Kisangani
(D.R. Congo). Belgian Journal of Zoology, 00, 00-00.
P8. Nicolas V., Colyn M. 2006. Relative efficiency of three types of small mammal traps in an
African rainforest. Belgian Journal of Zoology, 136(1), 107-111.
P9. Nicolas V., Querouil S., Verheyen E., Verheyen W., Mboumba J.F., Dillen M., Colyn M. 2006.
Mitochondrial phylogeny of African wood mice, genus Hylomyscus (Rodentia, Muridae):
Implications for their taxonomy and biogeography. Molecular and Phylogenetics Evolution,
38(3), 779-793.
P10. Nicolas V., Colyn M. 2006. Swimming ability in 5 species of African rainforest murid rodents in
relation to their habitat preferences. Zoological Studies, 45(2), 264-268.
P11. Pourtau N., Jennings R., Pelzer E., Pallas J., Wingler A. 2006. Effect of sugar-induced
senescence on gene expression and implications for the regulation of senescence in
Arabidopsis. Planta, 224(3), 556-568.
P12. Refoufi A., Esnault M.A. 2006. Genetic diversity and population structure of Elytrigia
pycnantha (Godr.) (Triticeae) in Mont Saint Michel bay using microsatellites markers. Plant
Biology, 8(2), 234-242.
P13. Sulmon C., Gouesbet G., El Amrani A., Couee I. 2006. Sucrose-induced tolerance to the
herbicide atrazine in Arabidopsis seedlings involves activation of oxidative and xenobiotic
stress responses. Plant Cell Reports, 25, 489-498.
P14. Sulmon C., Gouesbet G., El Amrani A., Couee I. 2006. Involvement of the ethylene-
signalling pathway in sugar-induced tolerance to the herbicide atrazine in Arabidopsis thaliana
seedlings. Journal of Plant Physiology, 164:1083-1092.
P15. Sulmon C., Gouesbet G., Couee I., Cabello-Hurtado F., Cavalier A., Penno C., Zaka R.,
Bechtold N., Thomas D., El Amrani A., 2006. The pleiotropic Arabidopsis frd mutation with
altered coordination of chloroplast biogenesis, cell size and differentiation, organ size and
number. Gene, 382, 88-99.
P16. Tempel S., Giraud M., Lavenier D., Lerman I.C., Valin A.S., Couee I., El Amrani A., Nicolas
J. 2006. Domain organization within repeated DNA sequences: application to the study of a
family of transposable elements. Bioinformatics, 22(16), 1948-1954.
P17. Tipirdamaz R., Gagneul D., Duhaze C., Ainouche A., Monnier C., Ozkum D., Larher F. 2006.
Clustering of halophytes from an inland salt marsh in Turkey according to their ability to
accumulate sodium and nitrogenous osmolytes. Environmental and Experimental Botany,
57(1-2), 139-153.


2007



P1. Akpatou B.K., Nicolas V., Pires D., N’Goran E., Colyn M. 2007. Morphometric differentiation
between two murid rodents, Praomys tullbergi (Thomas, 1894) and Praomys rostratus (Miller,
1900), in west Africa. Zootaxa, 1607, 21-34.
P2. Amirouche N., Misset M.T. 2007. Morphological variation and distribution of cytotype in the
diploid-tetraploid complex of the genus Dactylis L. (Poaceae) from Algeria. Plant Systematics
and Evolution, 264(3-4), 157-174.
P3. Deunff J., Whittaker J.O., Kurta A. 2007. Description of Cameronieta torrei dusbabeki (Acari:
Mesostigmata: Spinturnicidae), new subspecies with nymphs, parasitizing Pteronotus
quadridens fuliginosus (Chiroptera: Mormoopidae) from Puerto Rico. Journal of Medical
Entomology, 44(2), 179-185.
P4. Fortune P.M., Schierenbeck K.A., Ainouche A.K, Jacquemin J., Wendel J.F., Ainouche
M.L. 2007. Evolutionary dynamics of Waxy and the origin of hexaploid Spartina species
(Poaceae). Molecular Phylogenetics and Evolution, 43(3), 1040-1055.
P5. Gagneul D., Ainouche A., Duhaze C., Le Caherec L., Leport L., Larher F., Bouchereau A.
2007. A reassessment of the function of the so-called compatible solutes in the halophytic
Plumbaginaceae Limonium latifolium. Plant Physiology, 144(3), 1598-1611.
P6. Kolliker M., Vancassel M. 2007. Maternal attendance and the maintenance of family groups in
common earwigs (Forficula auricularia): a field experiment. Ecological Entomology, 32, 24-27.
P7. Masclaux-Daubresse C., Purdy S., Lemaitre T., Pourtau N., Taconnat L., Renou J.P., Wingler
A. 2007. Genetic variation suggests interaction between cold acclimation and metabolic
regulation of Leaf senescence. Plant Physiology, 143(1), 434-446.
P8. Murakeozy E.P., Ainouche A., Deslandes E., Meudec A., Poupart N. 2007. Phylogenetic
relationships and genetic diversity of the Salicornieae (Chenopodiaceae) native to the Atlantic
coasts of France. Plant Systematics and Evolution, 264(3-4), 217.
P9. Nicolas V., Colyn M. 2007. Efficiency of fluorescent powder tracking for studying use of space
by small mammals in an African rainforest. African Journal of Ecology, 45(4), 577-580.
P10. Ramel F., Sulmon C., Cabello-Hurtado F., Taconnat L., Martin-Magniette M.L., Renou J.P., El
Amrani A., Couee I., Gouesbet G. 2007. Genome-wide interacting effects of sucrose and
herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and
sucrose-induced tolerance. BMC Genomics, 8, 450.
P11. Sulmon C., Gouesbet G., Binet F., Martin-Laurent F., El Amrani A., Couee I. 2007. Sucrose
amendment enhances phytoaccumulation of the herbicide atrazine in Arabidopsis thaliana.
Environmental Pollution, 145(2), 507-515.
P12. Sulmon C., Gouesbet G., El Amrani A., Couee I. 2007. Involvement of the ethylene-signalling
pathway in sugar-induced tolerance to the herbicide atrazine in Arabidopsis thaliana seedlings.
Journal of Plant Physiology, 164(8), 1083-1092.
P13. Tempel S., Nicolas J., El Amrani A., Couee I. 2007. Model-based identification of Helitrons
results in a new classification of their families in Arabidopsis thaliana. Gene, 403(1-2), 18-28.



2008


Leblanc A, Renault H
, Lecourt J, Etienne P, Deleu C, Le Deunff E (2008) Elongation
Changes of Exploratory and Root Hair Systems Induced by Aminocyclopropane
Carboxylic Acid and Aminoethoxyvinylglycine Affect Nitrate Uptake and BnNrt2.1 and
BnNrt1.1 Transporter Gene Expression in Oilseed Rape. Plant Physiology, 146: 1928-
1940

P14. Dubey S., Salamin N., Ruedi M., Barriere P., Colyn M., Vogel P. 2008. Biogeographic origin
and radiation of the Old World crocidurine shrews (Mammalia : Soricidae) inferred from
mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution, 48(3), 953-963.

P15. Fortune P.M., Schierenbeck K., Ayres D., Bortolus A., Catrice O., Brown S., Ainouche M.L.
2008. The enigmatic invasive Spartina densiflora: A history of hybridizations in a polyploidy
context. Molecular Ecology, 17(19), 4304-4316.
P16. Fortune P., Pourtau N., Viron N., Ainouche M. 2008. Molecular phylogeny and reticulate
origins of the polyploid

Bromus

species from section

Genea

(Poaceae). American Journal of
Botany, 95, 4, 454-464.
P17. Gambalemoke M., Mukinzi I., Amundala D., Gembu T., Kaswera K., Katuala G.B., Dudu A.,
Barriere P., Colyn M., Hutterer R., Kennis J., Leirs H., Vanlinden B., Verheyen E. 2008.
Microgeographical distribution of shrews (Mammalia, Soricidae) in the Congo River basin
(Kisangani, D.R. Congo). Mammalia, 72(3), 213-222.
P18. Heulin B., Garnier D., Surget-Groba Y., Deunff J. 2008. Plasma levels of estradiol during
vitellogenesis and early gestation in oviparous and viviparous Lacerta (Zootoca) vivipara.
Amphibia-Reptilia, 29(1), 135-139.
P19. Kouassi S.K., Nicolas V., Aniskine V., Lalis A. Cruaud C., Couloux A., Colyn M., Dosso M.,
Koivogui L., Verheyen E., Akoua-Koffi C., Denys C. 2008. Taxonomy and biogeography of
the African pygmy mice, subgenus Nannomys (Rodentia, Murinae, Mus) in Ivory Coast and
Guinea (west Africa). Mammalia, 72(3), 237-252.
P20. Nicolas V., Wendelen W., Barrière P., Dudu A, Colyn M. 2008. Morphometric variation in
Hylomyscus alleni and H. stella (Rodentia: Muridae), and description of a new species.
Journal of Mammalogy, 89(1), 222-231.
P21. Nicolas V., Mboumba J.F., Verheyen E., Denys C., Lecompte E., Olayemi A., Missoup A.D.,
Katuala P., Colyn M. 2008. Phylogeographic structure and regional history of Lemniscomys
striatus (Rodentia: Muridae) in tropical Africa. Journal of Biogeography, 35(11), 2074-2089.
P22. Nicolas V., Bryja J., Akpatou B., Konecny A., Lecompte E., Colyn M., Lalis A., Couloux A.,
Denys C., Granjon L. 2008. Comparative phylogeography of two sibling species of forest-
dwelling rodent (Praomys rostratus and P. tullbergi) in West Africa: different reactions to past
forest fragmentation. Molecular Ecology, 17(23), 5118-5134.
P23. Refoufi A., Esnault M.A. 2008. Population genetic diversity in the polyploid complex of
wheatgrasses using isoenzyme and RAPD data. Biologia Plantarum, 52(3), 543-547.


2009

P1. Renault H, Roussel V, El Amrani A, Arzel M, Renault D, Bouchereau A, Deleu C (2009) The
Arabidopsis pop2-1 mutant reveals the involvement of GABA transaminase in salt stress
tolerance. BMC Plant Biology (sous presse).

P2. Ainouche M.L., Fortune P., Salmon A., Parisod C., Grandbastien M.A., Fukunaga K., Ricou
M., Misset M.T. 2009. Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae).
Biological Invasions, 11(5), 1159-1173.

P3. Mukinzi I., Kadange N., Bapeamoni A., Amundala D., Gembu T., Kaswera K., Danadu M.,
Gambalemoke M., Katuala P.G.B., Dudu A., Colyn M., Hutterer R. 2006. Preliminary data
collected on biodiversity of rodents and insectivores (Mammalia) in the periphery of Kisangani
(D.R. Congo). Belgian Journal of Zoology, 00, 00-00

P4. Nicolas V., Barriere P., Tapiero A., Colyn M. 2009. Shrew species diversity and abundance in
Ziama biosphere reserve, Guinea: comparison among primary forest, degraded forest and
restoration plots. Biodiversity and Conservation, 18(8), 2043-2061.

P5. Rousseau-Gueutin M., Gaston A., Ainouche A., Ainouche M.L., Olbricht K., Staudt G.,
Richard L., Denoyes-Rothan B. 2009. Tracking the evolutionary history of polyploidy in Fragaria
L. (strawberry): new insights from phylogenetic analyses of low-copy nuclear genes. Molecular
Phylogenetics and Evolution, 51(3), 515-530.

P6. Parisod C. Salmon A., Zerjal T., tenaillon M-A, M-A Grandbastien, M-A, Ainouche M. 2009.
Rapid structural and epigenetic reorganization near Transposable Elements in hybrid and
allopolyploid genomes in Spartina. New Phytologist, 184, 1003-1015
P7. Salmon A. et Ainouche M. 2009. Polyploidy and DNA methylation : New tools available.
Molecular Ecology. Perspective. Doi:10.1111/j.1365-294x.2009.04461.x



Brevets
1- El Amrani Abdelhak, Christophe Biteau and Francisco Cabello-Hurtado (2008) international
Patent n° PCT/EP2008/066176

2- El Amrani A, Biteau C et Cabello-Hurtado F. (2007) Procédé d’amélioration de la résistance
des végétaux au stress et produits correspondants, Brevet Français, FR-07 57372

3- Sulmon C, Gouesbet G, Couée I, El Amrani A (2006) Method for improving the phytoremediation
of polluted sites by providing plants with exogenous carbohydrates. USA patent, US2007093388

4- Sulmon C, Gouesbet G, Couée I, El Amrani A (2005) "Procédé d'amélioration de la
phytoremédiation de sites pollués par l'apport aux plantes de glucides exogènes", Bulletin Officiel de
la Propriété Industrielle 11, n° 2 859 600

5- Sulmon C, Gouesbet G, Couée I, El Amrani A International Application (Patent Cooperation
Treaty), 2005, PCT/FR04/02294.


Articles dans des revues sans comité de lecture

AINOUCHE M. 2007 - Effet de la polyploïdie sur la biodiversité et l’évolution du génome des plantes.
Publications de l’Institut Français de la Biodiversité. 5
e
Journées de l’IFB, Tours :
Biodiversité,14-19.
AINOUCHE M. 2008 – Histoire évolutive et conquêtes de la spartine anglaise : contexte génomique
de la naissance d’une espèce. Aestuaria, 13, 35-52.
El Amrani A. et
Cabello-Hurtado C. (2009)
La phytoremédiation : une nouvelle stratégie qui vise à
utiliser les plantes pour dépolluer l’environnement, PHM, 514:9-11

El Amrani A. et
Cabello-Hurtado C. (2008) La phytoremédiation s’attaque aux sols gorgés de polluants,
lesEchos, Rubrique environnement. pp : 22. Article publié le 04 avril 2008

Cabello-Hurtado C
. et El Amrani A.
(2007) La phytoremédiation : une découverte en biotechnologie
environnementale. Bretagne 6 :76-79

El Amrani A. et
Cabello-Hurtado C. (2005) Des chercheurs rennais boostent la capacité des plantes à
décontaminer les sols. Rennes Atalante Info, Edito : Technopoles de compétitivité, 4
ème
trimestre 2005,
pp5


Ouvrages scientifiques (ou chapitres) (OS)

SCHIERENBECK K. and AINOUCHE M. 2006 - The role of evolutionary genetics in the study of
plant invasions. In Conceptual Ecology and Invasion Biology: Reciprocal approaches to
Nature. M. Cadotte, S.M. Mc Mahon & T. Fukami Eds, 193-221.





II.2.8 Direction d'ouvrages (DO)



HDR SOUTENUES



THESES SOUTENUES

2007

Fortune Philippe 2007. Phylogénie et dynamique des gènes dupliqués chez les plantes
polyploides : Evolution dans les genres Bromus L. et Spartina Schreb (Poaceae). Thèse de
doctorat de l’Université de Rennes I. 189 p. 27/06/2007.
Mboumba Jean-Francois 2007. Histoire des savannes incluses du Mayombe. Phylogéographie
comparée de trois Muridés africains (Rodentia, Muroidea) : le cas du Gabon. Thèse de
doctorat de l’Université de Rennes I. 18/07/2007.
Tempel Sébastien 2007. Dynamique des hélitrons dans le génome d’Arabidopsis thaliana :
Développement de nouvelles stratégies d’analyse des éléments transposables. Thèse de
doctorat de l’Université de Rennes I. 18/06/2007.

2008


2009
Hugues Renault 2009. Génomique fonctionnelle du métabolisme du GABA chez Arabidopsis
thaliana : contribution à l’étude des réponses au stress salin. Thése de doctorat de l’Université de
Rennes 1, 11/12/2009
Mahé Frédéric 2009. Phylogénie, Eléments transposables et Evolution de la taille des génomes
chez les lupins. Thèse de doctorat de l’Université de Rennes I. 17/12/2009.
Ramel Fanny 2009. Implication des sucres solubles dans les réponses aux stress xénobiotique et
oxydatif chez Arabidopsis thaliana. Thèse de doctorat de l’Université de Rennes I.
20/01/2009.