Schedule for the Summer Institute in Bioinformatics - American River ...

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Oct 1, 2013 (3 years and 10 months ago)

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S
UMMER
I
NSTITUTE IN
B
IOINFORMATICS

FOR
H
IGH
S
CHOOL
T
EACHERS


June 23
-
27, 2008


Sponsored by:

North Valley Biotechnology Center, American River College

Jeffery O’Neal, Director

Dr. Kelly McDonald, NSF Bioinformatics Coordinator

Lynda Phoeni
x, Bioinformatics Clerk


In Partnership with the University of California at Davis, Biotechnology Program

Dr. Judith Kjelstrom, Director

Dr. Denneal Jamison
-
McClung, Associate Director

and

Edward Teller Education Center, University of California at Davis

C
arey Kopay, Director


Funded by a grant from the National Science Foundation

(NSF
-
ATE
DUE Award #0603481)


Lead Instructor:

Dr. Denneal Jamison
-
McClung


Guest Lecturers:

Dr. Carl Winter, UC Davis

Dr. Brian Bennion, Lawrence Livermore National Laboratories

Dr. Ken Kubo, American River College

Leeann O’Bear, Sheldon High School

Lilibeth Pinpin, Hogan High School














Summer Institute in Bioinformatics

Workshop Schedule



Sunday, June 22


4:00pm
-
9:00pm

Check in with Conference Housing at Emerson Hall


4
:45pm
-
6:30pm

Dinner (Segundo Dining Commons)



Monday, June 23


6:30am

8:00am

Breakfast (Segundo)


Lecture Session: Room 122, Briggs Hall


8:30am
-
8: 45am

Welcome Address (Jeffery O’Neal, Director NV&MBC)


8:45am
-
9:30am

Instructor & Student Introductions;

Housekeeping Issues


(Dr. Kelly McDonald, NSF Bioinformatics Coordinator)


9:30am


10:00am

Pre
-
assessment (Dr. Kelly McDonald)

Overview of the Summer Institute in Bioinformatics topics

(Dr. Jamison
-
McClung)


10:00am
-

10:15am

Break


10:15am
-
11:45am

Intr
oduction to Bioinformatics & Using Web Based Tools


(Dr. Jamison
-
McClung)


12:00

12:45pm

Lunch (Segundo)



Lab Session: 2020 Sciences Laboratory Building (SLB)


1:00pm
-

3:30pm

Overview of NCBI


“Getting Started” (Dr. Jamison
-
McClung)


3:30pm
-

4:30pm

Beg
in Curriculum Development Group Assignments


4:30
-
5:00pm


Overview of Davis (Jeffery O’Neal)


5:00
-
6:30pm


Dinner (Segundo)




Tuesday, June 24


6:30am

8:00am

Breakfast (Segundo)


Lecture Session: Room 122, Briggs Hall


8:30am
-
9:45am

Interpreting Genomic Da
ta: Unlocking the Mysteries of Our Genetic
Blueprint (Dr. Jamison
-
McClung)


9:45am
-
10:15am

Mystery Gene Activity (Dr. Kelly McDonald)


10:15am
-
10:30am

Break


10:30am
-
11:45am

Applied Biotechnology: Using Genomics and Proteomics to Create
Useful Products, Pr
ocesses & Services

(Dr. Jamison
-
McClung)


12:00

12:45 pm

Lunch (Segundo)


Lab Session: 2020 Sciences Laboratory Building (SLB)


1:00pm


1:15pm

Demo of BioMolecular Explorer 3D tool (Dr. Kelly McDonald)


1:15pm


2:00pm

“Who’s Your Daddy” Paternity Activi
ty (Dr. Denneal Jamison
-
McClung, compliments of Dr. Ruth Ballard, CSUS)


2:00


4:30pm

Continue Curriculum Development Activity


5:00pm
-
6:30pm

Dinner (Segundo)



Wednesday, June 25


6:30am

8:00am

Breakfast (Segundo)


Lecture Session: Room 122, Briggs Ha
ll


8:30am
-
9:45am

Comparing Genomes (Dr. Jamison
-
McClung)


9:45am
-
10:15am

“Genomic DNA Typing and the
Salmonella

Tomato Scare” Activity
(Dr. Ken Kubo)


10:15
-
10:30am

Break


10:30am
-
11:45am

“Stayin’ Alive: Music, Food and Health” (Dr. Carl Winter)






12:00

12:45 pm

Lunch (Segundo)


Lab Session: 2020 Sciences Laboratory Building (SLB)


1:00pm
-
3:30pm

Continue Curriculum Development Activity




3:45pm
-
4:30pm

Tour of the UC Davis Genome Center


5:00pm
-
6:30pm

Dinner (Segundo)


Davis Farmer’s Market: Optional


6:
30pm
-
10:00pm

Open Computer Lab in SLB 2020 (optional)



Thursday, June 26


6:30am

8:00am

Breakfast (Segundo)


Lecture Session: Room 122, Briggs Hall


8:30am
-
9:00am

Introduction to Online Bioinformatics Resources (Dr. Ken Kubo)


9:30am
-
11:30am

Tour or Ar
cadia Biosciences, Inc.




11:45am

12:45pm

Lunch (Segundo)


Lab Session: 2020 Sciences Laboratory Building (SLB)


1:00 pm
-
2:00pm

“Build Your Own Protein” Activity (Dr. Kelly McDonald)


2:00
-
3:00pm

“Food Mutagens and Hormones: Bits and Bytes in Biology” (
Dr.
Brian Bennion)


3:00
-
3:45 pm

Protein Modeling Computer Activity (Dr. Brian Bennion)


3:45pm
-
5:00pm

Finalize and Submit Curriculum Development Activity


5:30pm
-
6:30pm

Dinner (Segundo) or Evening in Old Town Sacramento














Friday, June 27


6:30am

8:00am

Breakfast (Segundo)




Roundtable Discussion: Room 1022, Life Sciences Addition


8:30am
-
9:00am

Post
-
assessment and Course Evaluations (Dr. Kelly McDonald)


9:00
-
9:15am

Distribute Curriculum Packets & Resource Materials for Instructors
(Dr. Jamison
-
McClung)


9:15am
-
10:15am

Roundtable Discussion, Certificate Presentations


10:15am
-
10:30am

Break (2007 Summer Institute Participants join)


10:30am
-
11:30am

LeeAnn O’Bear and Lilibeth Pinpin Presentation of Biotech Programs


11:30am
-
11:45am

Closing Remar
ks for 2008 Summer Institute

Conference Housing Check out


2007 Summer Institute’s Participants Meeting to follow (until 2pm)







Summer Institute in Bioinformatics


made possible by funding from NSF
-
ATE DUE award #0603481.


Principle /Co
-
Principle Inve
stigators of grant include:

Jeffery O’Neal, M.S, American River College

Judith Kjelstrom, Ph.D., UC Davis

Ken Kubo, Ph.D., American River College

Carey Kopay, M.S., UC Davis/ETEC


NSF Bioinformatics Program Coordinator:

Kelly McDonald, Ph.D.