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tastelesscowcreekBiotechnology

Oct 4, 2013 (3 years and 8 months ago)

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World’s Leading Provider of Turn
-
key
Compute Solutions for NGS /
Bioinformatics


Founded in 1989


Over 1000
PowerWulf

Clusters Delivered World Wide


350+
PowerWulf

Clusters Dedicated Compute Appliances for
NGS / Bioinformatics


Mission Statement


Tier 1 Manufacturing & Support at Commodity Price


Custom Configured Products Include


Turn key
PowerWulf

Compute Clusters


RaidStation

Storage Solutions


High Performance Workstations & Servers


Selected by Roche / 454 and
CLCbio

as OEM Hardware Provider


Over 60% of ALL WORLDWIDE data off GS FLX Titanium Platform is analyzed on PSSC Labs Platform


Roche’s Success in this space linked directly to PSSC Labs
PowerWulf

Cluster solution


CLCbio

is a leader in genomics software solutions



Certified our
PowerWulf

Clusters and Servers Compatible with Life Technologies’ Bioscope &
Illumina’s

Casava

Applications



Pacific Biosciences considering PSSC Labs as OEM Hardware Provider



Recent LARGE Cluster Wins


Western Kentucky University


5000+ Cores


PSSC Labs Selected after evaluation of Dell, HP, IBM


OpenX.org


7000+ Cores


PSSC Labs Selected after evaluation of Dell, HP, IBM


MIT / Harvard / HHMI
Neuroimaging

Center


Largest GPU Cluster at MIT



Revolutionary POWERSERVE DUO TI2000


Perfect Cluster Building Block


Tool
-
Free Design


Power Saving Eco Friendly Features


World Wide Support & Maintenance



Partnerships w/ leading Sequencing Platform Providers



Roche / 454


OEM Provider of GS FLX Titanium Cluster (
www.pssclabs.com/roche
)



Life Technologies


Certified Cluster Solutions w/ Bioscope Preconfigured



Illumina


Certified Cluster / Server Solutions w/
Casava

Preconfigured



Pacific Biosciences


Potential OEM
Proider

of off line cluster for new RS platform



Ion Torrent


Certified Workstation w/ Ion Torrent Software



CLC Bio


Selected as OEM Hardware Provider of Genomics Machine / Factory


Delivery Fully Functional / Turn Key Systems


Biologist are typically not system administrators. Just need a
system that works out of the box.



Superior Knowledge & Support


You will have direct communication with the PSSC Labs Cluster
Engineer that built, tested and configured the system with your
applications.



Our Remote Assist support provides greater more responsive
support than any other vendor



We Understand Your Business


Seqwright

needs a knowledgeable cost effective hardware provider
that ensures they deliver their customer results on time, every
time.


Our systems are considered the industry’s most reliable with a failure
rate >0.01%. This is a direct result of our superior testing procedure


PSSC Labs Runs Benchmarks Provided by
Application to Certify Systems


Typical benchmarks include small and large data
sets for all pipeline steps (mapping, assembly,
alignment)


Example


WT Run is one of three stress tests we run to certify
our clusters for Bioscope


Results: DURATION= 6 hours 36 minutes 44
secs



Configuration: 8 Core (2.67
Ghz
) / 48GB Memory)


Information obtained from end users


Illumina

/
Casava


UCI Irvine


We are sequencing Drosophila (fruity fly) samples. The
genome is approximately 1.2 x 10
8

base pairs.


One lane of paired
-
end, 75bp data from an
Illumina

GA2
machine gives about 25X coverage of a genome.


Roughly 35 million pairs of reads per lane or 2* 75 *35e6 = 5.25e10
base pairs of data.


We sequence 3 lanes per sample. Pipeline involves a lot of
custom software to do our analyses, and we can entirely
process a single sample in about 12 hours. This is much more
than simply doing the alignments



System Configuration


PowerServe

Duo T2400 (Single SMP System)


8 Processor Cores / 2.4
Ghz


128 GB System Memory


40 TB USABLE High Speed Storage Space






Information obtained from end users


Illumina

/
Casava


St.
Radbound

University


“Mapping one
exome

sample to the human reference
takes about 8.5 hours using Bioscope 1.3”


System Configuration


PowerWulf

Cluster


64 Processor Cores / 2.53
Ghz

/ 8 Cores Per Node


4 GB Memory Per Core







CLC Bio Genomics Factory Comparison


PSSC Labs is OEM Provider of Genomics Factory


156 Cores (12 cores per node / 2.53
Ghz
)


4 GB of Memory Per Core


Stated Performance on Website


Mapping, whole human genome, 15x coverage: 32 Full
Human Genomes Per Week (2 x 100
basepair

Illumina

GA


data


Whole human
transcirptome

analysis (RNA
-
seq
): 600
Samples per week (130 million 50bp
SOLiD

reads