Paper Assignment

stalliongrapevineBiotechnology

Oct 1, 2013 (3 years and 8 months ago)

82 views

Presentation

12/9/11

Paper 1: “Improvements in Protein Secondary Structure Prediction by an Enhanced Neural
Network” ,
Kneller DG
,
Cohen FE
,
Langridge R
.,
J Mol Biol.

1990 Jul 5;214(1):171
-
82.

Paper 2: “Prediction of Protein Secondary Structure at Better than 70% Accuracy”,
Rost B
,
Sander C
.,
J Mol Biol.

1993 Jul 20;232(2):584
-
99.

Paper 3: “
Assembly of Protein Tertiary
Structures from

Fragments with Similar Local Sequences using Simulated
Annealing and Bayesian Scoring Functions”,
KimT. Simons, Charles Kooperberg, Enoch Huang

and David Baker
,
J.
Mol. Biol. (1997) 268, 209
-
225

Assignment list:

1.

Paper 1
-

2(a), 2(b);

2.

Paper

1


2(c), 2(d);

3.

Paper 2


2(c), 2(d);

4.

Paper 2


2(e), 2(f);

5.

Paper 3


Scoring functions (p210
-
213 Results


Scoring functions),

6.

Paper 3


Structure generation (p221
-
222 Methods), p213
-
214 Results
-

Generation of
Structures;

Guideline



Each person

has
20
-
25

minutes with maximum of 8

slides to discuss. The basis of the
judgment is the correctness, clarity and completeness

of the coverage
for

the section you
are in charge.

The presentation is treated as a homework assignment.



Please send me the slides of your
presentation

no later than 11
am on
Friday 12/9
/11.

I
will put your slides together

to reduce
the

transition time.



Each
person

has a specific section of the paper to present. You are expected to present the
major concepts and methods in your section. Usual
ly, to understand those concepts and
methods, it is necessary to look for any additional resources such as the

papers cited,
online materials and books.