Advanced Bioinformatics

hordeprobableBiotechnology

Oct 4, 2013 (3 years and 11 months ago)

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Advanced Bioinformatics

BIF
-
30806

Welcome

Content of the course

Basic Linux

Perl scripting

Open Bioinformatics
Software


Protein Motifs

Protein Interactions

Semantic web


NGS

RNA
-
seq/splicing

Comparative genomics

Chip
-
Seq


Project

Teachers

Jack Leunissen

Harm Nijveen

Aalt
-
Jan
van
Dijk

Edouard Severing

Elio Schijlen

Felipe
Leal
Valentim

Joachim
Bargsten

Jose Muino

Ke Lin

Pierre
-
Yves Chibon

Pjotr Prins

Sandra Smit

Saulo Alves Aflitos

Tom de Man


Grading

Exercises(8) + Perl exam

30%

Project Report


50%

Project Presentation

20%



(inter)active participation during lectures and
practical sessions is highly appreciated

Hours

Mornings:

9
-

12


Afternoon:

13
-

17:15


Coffee/tea breaks as required

Location

Lectures:

PC 771



Practical sessions and project work:

PC 771, G 790, G 794, G 795

Project

Create an analysis pipeline using Perl to answer
a biological question


2 weeks


Small teams of ~4 students


One report and presention
per student

Perl

Introduction to the language


Focus on practical use


Exercises numbered 1
-

8 should to be mailed
before Feb 23 to:
harmn@bioinformatics.nl


Written exam after one week

Perl Gurus

Already a Perl Guru?


Then you can skip the Perl classes


But:

You should hand in the exercise solutions and do
the written exam (easy)


Overestimation of Perl skills is at your own risk...