Development of algorithms and intelligent software for investigation of regulatory processes and control systems on the genome level

finickyontarioAI and Robotics

Oct 29, 2013 (3 years and 5 months ago)

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Development of algorithms and intelligent software for
investigation of regulatory processes and control systems on the
genome level
Victor Kasyanov
Laboratory for Program Construction and Optimization,Institute of Informatics
System,630090,Novosibirsk,Lavrentiev pr.6,Russia [kvn@iis.nsk.su]
2000 Mathematics Subject Classification.68T05,68T35,92D20
In the paper,the BioSys project aimed at the development of algorithms and
intelligent software for investigation of regulatory processes and control systems
on the genome level is described [1],[2],[3].
Novel methods and effective algorithms for analysis of DNA sequences on the
basis of visualization and comparing with known codes are presented.An inte-
grated computational method for analysis and interpretation of gene expression is
described.A method for comparison of algorithms for recognition of CIS-elements
is presented.A subsystem for development and testing of applications in the field
of the DNA regulation sequences analysis is described.
An environment for development of neural networks is presented.This subsys-
tem is based on a component based paradigm and supports the most commonly
used network architectures and a comprehensive set of training and learning func-
tions.It provides a complete set of functions and a graphical user interface for the
design,implementation,visualization,and simulation of neural networks,and it
has advanced preprocessing,analysis and visualization capabilities.
The author is thankful to all colleagues taking part in the BioSys project.
The work is partially supported by the Human Capital Foundation.
[1] Software Tools and Mathematical Foundation of Informatics/Ed.V.N.Kasyanov,
Novosibirsk,IIS,2004,278 P.(in Russian).
[2] Tools and Techniques of Program Construction and Optimization/Ed.V.N.Kasya-
nov,Novosibirsk,IIS,2005,274 P.(in Russian).
[3] Problems of Intellectualization and Quality of Informatics Systems/Ed.V.N.Kasya-
nov,Novosibirsk,IIS,2006.(to appear).