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Oct 2, 2013 (3 years and 2 months ago)

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Software engineering
challenges in
bioinformatics

26th International Conference on
Software Engineering (ICSE'04)


By Jonathan Barker, Janet
Thornton

Publication Date: May 2004

pp. 12
-
15

Poster by: Bertha Lee

Challenges


data integration

Storage

Organization

Retrieval

Analysis



presentation



Summary of Paper


Identify the challenge


Cause of challenge


Solution to the Challenge


Data and tool


Raw Data


Sequence Data


Database


PDB, E
-
MSD , CATH


Tool


SOAP


BLAST

Who’s in the Field

Mathematician

Physicist

Computer

Scientist

Biologist

Chemist

Bioinformatics

Presentation of Data


Molecular view


Network view


Hierarchical view


Bird View


3D graphic display


Data Standardization


Gather Data in a standardized format


Create communication among tools


Include software engineering and data
administrator



Presentation

Navigation is the Key

critique

Question??


What are the challenges Software
engineering in Bioinformatics are facing?


What is the cause of these Challenges?


Do you think author’s proposal will solve the
problem and why?