Biopython: freely available Python tools for computational molecular ...

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Feb 20, 2013 (4 years and 5 months ago)

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Biopython: freely available Python tools for
computational molecular biology and
bioinformatics


Author(s):

Cock, PJA
(Cock, Peter J. A.)
1
;
Antao, T

(Antao,
Tiago)
2
;
Chang, JT
(Chang, Jeffrey T.)
3
;
Chapman, BA
(Chapman,
Brad A.)
4
;
Cox, CJ

(Cox, Cymon J.)
5
;
Dalke, A
(Dalke, Andrew)
6
;
Friedberg, I
(Friedberg, Iddo)
7
;
Hamelryck, T
(Hamelryck,
Thomas)
8
;
Kauff, F
(Kauff, Frank)
9
;
Wilczynski, B

(Wilczynski,
Bartek)
10
,
11
;
de Hoon, MJL
(de Hoon, Michiel J. L.)
12


Source:
BIOINFORMATICS


Volume:

25


Issue:

11


Pages:

1422
-
1423


DOI:

10.1093/bioinformatics/btp163


Published:

JUN
1 2009

Times Cited:

98

(from Web of Science)

Cited References:

23

[
view related records

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Citation
Map






Abstract:

The Biopython project is a mature open
source
international collaboration of volunteer developers, providing
Python libraries for a wide range of
bioinformatics

problems.
Biopython includes modules for reading and writing different
sequence. le formats and multiple sequence alignments, dealing
with 3D macromolecular structures, interacting with common tools
such as BLAST, ClustalW and EMBOSS, accessing key online
databases, as well as providing numerical methods for statistical
learning.

Accession Number:

WOS:000266109500013

Document Type:

A
rticle

Language:

English

KeyWords Plus:

SOFTWARE
;
DATABASE


Reprint Address:

Cock, PJA (reprint author), Scottish Crop Res
Inst, Dundee DD2 5DA, Scotland.

Addresses:


1. Scottish Crop Res Inst, Dundee DD2 5DA, Scotland

2. Univ Liverpool Liverpool
Sch Trop Med, Liverpool L3 5QA,
Merseyside, England

3. Duke Univ, Med Ctr, Inst Genome Sci & Policy, Durham, NC
USA

4. Massachusetts Gen Hosp, Dept Mol Biol, Simches Res Ctr,
Boston, MA 02114 USA

5. Univ Algarve, Ctr Ciencias Mar, Faro, Portugal

6. And
rew Dalke Sci AB, Gothenburg, Sweden

7. Univ Calif San Diego, Calif Inst Telecommun & Informat
Technol, La Jolla, CA 92093 USA

8. Univ Copenhagen, Dept Biol, Bioinformat Ctr, DK
-
2200
Copenhagen N, Denmark

9. TU Kaiserslautern, Dept Biol, D
-
67653 Kaisers
lautern, Germany

10. European Mol Biol Lab, D
-
69117 Heidelberg, Germany

11. Univ Warsaw, Inst Informat, PL
-
00325 Warsaw, Poland

12. RIKEN, Om Sci Ctr, Tsurumi Ku, Yokohama, Kanagawa
2300045, Japan

ResearcherID Numbers: [
?

]

[ 4 researcher(s) included this record in their ResearcherID My
Publication List. Click

to view. ]
de Sousa,
Miguel


A
-
3877
-
2009

[ View

profile at
ResearcherID.com ]

Wilczynski,
Bartek


A
-
5710
-
2009

[ View profile at
ResearcherID.com ]

Antao, Tiago


C
-
3615
-
2009

[ View profile at
ResearcherID.com ]

Times Cited:


98


This
article has been cited
98 times in Web of
Knowledge.

Rademacher,
Christoph. A Siglec
-
like sialic
-
acid
-
binding
motif revealed in an
adenovirus capsid
protein.
GLYCOBIOLOGY,
AUG 2012.

Kulp, Daniel W.
Structural informatics,
modeling, and design
with an ope
n
-
source
Molecular Software
Library (MSL).
JOURNAL OF
COMPUTATIONAL
CHEMISTRY, JUL 30
2012.

Swanson, Maud M.
Novel Bacteriophages
Containing a Genome
of Another
Bacteriophage within
Their Genomes.
PLOS ONE, JUL 17
2012.

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Cox, Cymon


D
-
1303
-
2012

[ View profile at
ResearcherID.com ]


Funding:

Funding Agency

Grant Number

Fundacao para a Ciencia e Tecnologia
(Portugal)


SFRH/BD/30834/2006



[Show funding text]





Publisher:

OXFORD UNIV PRESS, GREAT CLARENDON ST,
OXFORD OX2 6DP, ENGLAND

Web of Science Categories:

Biochemical Research Methods;
Biotechnology & Applied Microbiology; Computer Science,
Interdisciplinary Applications; Mathematical & Computational
Biology;
Statistics & Probability

Research Areas:

Biochemistry & Molecular Biology;
Biotechnology & Applied Microbiology; Computer Science;
Mathematical & Computational Biology; Mathematics

IDS Number:

446GG

ISSN:

1367
-
4803





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