Schedule for the Summer Institute in Bioinformatics - American River ...

austrianceilBiotechnology

Oct 1, 2013 (3 years and 8 months ago)

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S
UMMER
I
NSTITUTE IN

F
UNCTIONAL
G
ENOMICS AND
B
IOINFORMATICS

FOR
C
OMMUNITY
C
OLLEGE
F
ACULTY


August
1
-
5
, 200
5

at UC Davis


Sponsored by:

North Valley & Mountain Biotechnology Center, A
merican River College

Jeffery O’Neal
, Director


In
Part
nership

with the

U
niversity of California at Davis
,
Biotechnology Program

Dr. Judith Kjelstrom, Director


Funded by a grant from the National Science
Foundation

(NSF
-
ATE
DUE Award

#0302940
)


Lead Instructor:

Dr.
Denneal Jamison
-
McClung


Guest
Lecturers
:

R
obert
D.
Cormia
, Foothill College

Dr.
Paul Harris
,
Novozymes

Dr. Ken Kubo, American River College

Dr. Kelly McDonald
, American River College





Daily Confer
ence Transportation

Schedule


8:00am

8:20am

Transportation shuttle

from Conference Housing to UC Da
vis

campus






Pick up
at

Emerson

Hall of Cuarto Housing Commons.


11:
15
am
-
11:
3
0am

Transportation shuttle from
Briggs Hall at

UC Davis to Conference
Housing.



12:40pm
-
1:00pm

Transportation shuttle
from Conference Housing to
Science Laboratory
Building

a
t

UC Davis



4:
3
0pm
-
4:
45
pm

Transportation shuttle from
Science Laboratory Building

at

UC Davis to
Conference Housing.





Summer Institute

in Bioinformatics

Workshop

Schedule


Sunday,
July 31
st


3
:00pm
-
9:00pm

Check in with Conference Housing at Thoreau Hall


4:45pm
-
6:30pm

Dinner. (Oxford Dining Hall)



Monday, August
1
st


6:30
am

8:00am

Breakfast served.
(
Oxford

Dining
Hall
)


Lecture

Session
:
Room 122, Briggs Hall


8:30am
-
8: 45
am

Welcome

Address

(Jeff
ery

O’Neal
,
Director NVMBC
,

and

Dr.
Judy
Kjelstrom
,
Direct
or
,

UCD Biotech

Program
)


8:45
am

-
9:
15
am

Instructor &
Student Introductions

(C
arey

Kopay)


9:15am



9:
30
am

Overview of the S
ummer Institute in Bioinformatics
topics
&
assignments
(Dr. Jamison
-
McClung)


9:
30
am

-

9
:
45
am

Coffee Break


9
:
45
am
-
11:
15
am

Introduct
ion to Bioinformatics & Using Web Based Tools


11:
3
0am

1
:00

pm

Lunch (Oxford Dining Hall)


Lab Session: 2060 Sciences Laboratory Building (SLB)


1:
3
0pm
-

3
:
0
0pm

Overview of NCBI


“Getting Started”

(D. Jamison
-
McClung)


3
:
0
0pm
-

4
:
3
0pm

Start

C
urriculum
D
ev
elopment
Group A
ssignment
s


4:30
pm
-
5
:
00
pm

Driving Tour of Downtown Davis

Shuttle Vans Depart Science Laboratory Building

R
eturn to Cuarto Conference Housing Commons



5:
00



6:30pm

Dinner


Oxford Hall









Tuesday, August
2
nd


6:30am

8:00am

Breakfast se
rved.
(Oxford Dining Hall)


Lecture Session
:
Room 122, Briggs Hall


8:30am
-
9:
3
0am

Interpreting the Genome

(D. Jamison
-
McClung)


9:30am
-
9:40am

Coffee Break


9:40am
-
11:
15
am

“Small RNAs


A new class of Gene Regulators” (
Dr.
Kelly
McDonald
)


11:
3
0am

1:
00

pm

Lunch (Oxford Dining Hall)


Lab Session: 2060 Sciences Laboratory Building (SLB)


1:
3
0pm

-

2
:00pm

Introduction to the Online Bioinformatics Course

(
Ken Kubo
)


2:00pm


3:
15
pm

Continue Curriculum
Development Activity


3:
3
0
pm



5
:
0
0 pm

Tour UC Davis Genomi
c Facility (Dr. Richard Michelmore, Director)


5
:
00
pm
-
6:30pm

Dinner (Oxford Dining Hall)


6
:30
pm

-

8
:
0
0pm


Evening Seminar


Robert Cormia, Foothill College




Topic Maps and Learning Objects for Bioinformatics




(
Emerson Hall


3
rd

Floor Lounge
)



Wedne
sday, August 3
rd


6:30am

8:00am

Breakfast served. Oxford Dining Hall.


Lecture Session: Room 122, Briggs Hall


8:30am
-
9:30am

Applied Proteomics

(D. Jamison
-
McClung)


9:30am
-
9:40am

Coffee Break


9
:
4
0
am
-
11:
15
am

Introduction to

SNPs and Haplotypes

(Robert
Cormia)



11:
3
0am

1:
00

pm

Lunch (Oxford Dining Hall)





Lab Session: 2060 Sciences Laboratory Building (SLB)


1:
3
0pm
-
3
:
3
0pm

Phylogenetics using Multiple Sequence Alignment

(
Robert

Cormia)


3:
3
0pm
-
4:
3
0pm

Continued
Curriculum development assignment


4:45pm
-
6
:30pm

Dinner (Oxford Dining Hall)


Lab Session:
2060 Sciences Laboratory Building (SLB)


6
:
3
0pm
-
8
:00pm

Optional
E
vening

Computer Lab Hours


Complete Curriculum
Development Activity


Thursday, August
4
th



6:30am

8:00am

Breakfast served. (Oxford Dining H
all)


Lecture

Session
:

Room 122, Briggs Hall


8:30am
-
9:30am

Bioinformatics, Microarrays and Proteomics Applied to BioEnergy

(Dr. Paul Harris)


9:30am
-
9:40am

Coffee Break


9:40
am
-
10:40a
m

Constructing Databases & Programming

Advanced skills your
students ma
y need (D. Jamison
-
McClung)


10:
45
am
-
11:
15
am

Implementation Model for Bioinformatics Certificate Program


(
Dr.

Ken
Kubo)


11:
3
0am

1:00pm

Lunch (Oxford Dining Hall)


Lab Session: 2060 Sciences Laboratory Building (SLB)


1
:
3
0pm
-
3
:00pm

Continued Curriculum D
evelopment Activity



3:30 pm

Afternoon & Evening in Old Town

Sacramento

Vans Depart Davis at 3:30 pm

Capitol &
Old
Sacramento
Walking
Tour


Optional
L
ocal RiverCats Game
@
7:
0
0p
.
m
.

Return
trips
to Davis
at

8:00 pm OR
1
0
:
3
0 p
.
m.







Fri
day, August
5
th



6:
30am

8:00am

Breakfast served. (Oxford Dining Hall)




Roundtable Discussion: Room 1022, Life Sciences Addition


8:30am
-
9:
0
0am

Distribute curriculum packets

& Resource Materials for Instructors


(D. Jamison
-
McClung)


9:00am
-
9:30am

Former

P
articipants spea
k about implementing curriculum


9:30am
-
9:40am

Coffee Break


9:40am
-
1
0
:
5
0am

Certificate Presentation &
Roundtable
D
iscussion



10:50am
-
11:00am

Closing remarks (Jeffery O’Neal)


11:30am


Conference Housing Check out

















Summer Institute

in Bioi
nformatics


made possible by funding from

NSF
-
ATE
DUE award

#0302940.


Principle /Co
-
Principle Investigators of grant include:

Jeffery O’Neal, M.S
, American River College

Judith Kjelstrom, Ph.D.
, UC Davis

Ken Kubo, Ph.D.
, American River College

Lori Smith,

Ph.D.
, American River College