program and features of the course - Universitat de Barcelona

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1 Οκτ 2013 (πριν από 3 χρόνια και 10 μήνες)

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B
IOINFORMATICS

F
OR

B
IOLOGISTS (2
nd

Edition)

E
ASY

M
ANAGEMENT

O
F

G
ENOMIC

I
NFORMATION

Barcelona, 14
-
15
-
16
April 20
10


BACKGROUND:

-

Practical course for beg
inners (18 hours)

-

Audience:
20

people

-

Five speakers


TOPICS:

-

Genome data and annotation

-

Genomic browsers

-

Microarray analysis

-

Characterization of regulatory regions

-

High
-
throughput data mining

-

Next generation sequencing

-

Linux environments

in Bioinformatics


SCIENTIFIC ORGANIZER
:

Montserrat Corominas (PhD)

Departament de Genètica

Universitat de Barcelona


SPEAKERS:

Sergi Beltran (PhD)

Servei de Bioinformàtica i Anàlisi de Dades

Serveis Cientificotècnics


Universitat de Barcelona


Enrique B
lanco (PhD)

Departament de Genètica
-

IBUB

Universitat de Barcelona


Herbert Auer (PhD)

Functional Genomics Core Facility

Institut de Recerca Biomèdica Barcelona (IRBB)


David Martin (PhD)

Bioinformatics and Genomics group

Centre for Genomic Regulation (
CRG)


Ignacio Medina (PhD)

Bioinformatics department

Centro de Investigación Príncipe Felipe (CIPF)

SUMMARY OF THE COURSE


[DAY 1]

SESSION 1:
WELCOME AND
INTRODUCTION

(30 minutes
)

Speaker: Sergi Beltran

-

Course presentation


SESSION 2
:
GENOMIC DATA MININ
G
(1.5
h)

Speaker: Sergi Beltran

-

Tools and Databases


S
ESSION 3
: GENOME

BROWSERS

(
1.5
h)

Speaker: Enrique Blanco

-

NCBI /

UCSC

/ Ensembl


SESSION 4: BIOINFORMATICS ENVIRONMENTS (3
h)

Speaker: Enrique Blanco

-

LINUX genome pipelines


[DAY 2]

SESSION 5: GENE
EXPRESSION PROFILE

ANALYSIS SUITE (GEPAS) (3h)

Speaker: Ignacio Medina

-

GO enrichment analysis


SESSION 6
: PROMOTER ANALYSIS (3h)

Speaker: Enrique Blanco

-

Databases and tools, phy
logenetic footprinting


[DAY 3]

SESSION 7: HIGH
-
THROUGHPUT TECHNIQUES (1h
)

Speaker: Herbert Auer

-

Next generation sequencing techniques


SESSION 8: CHIP
-
SEQ ANALYSIS (2h)

Speaker: David Martin

-

ChIP
-
Seq data processing


SESSION 9: 454 DATA ANALYSIS (3h)

Speaker: Sergi Beltran

-

Genome assembly and annotation



SESSION 10
:
CLO
SURE
(
10 minutes
)

-

Concluding remarks


COURSE SCHEDULING:


WEDNESDAY



WELCOME / INTRODUCTION


9:00h

A
ULA
21

GENOMIC DATA



9:30h


COFEE BREAK

11:0
0h


GENOME


BROWSERS

11:3
0h


LUNCH

13
:
0
0h


BIOINFORMATICS
ENVIRONMENTS

15
:
00h

AULA
4

COFEE BREAK

16:
3
0
h


BIOINFORMATICS
ENVIRONMENTS

17:0
0h

-
18:30h




THURSDAY



GEPAS

ANNOTATION


9:00h

AULA21


COFFEE BREAK

10:30h


GEPAS

ANNOTATION

11:00h


LUNCH

13:0
0h


PROMOTER

ANALYSIS

15:0
0h

AULA4

COFFEE BREAK

16:3
0h


PROMOTER

ANALYSIS

17:0
0h

-

18:30h




FRIDAY



HIGH
-
THROUGHPUT


9:00h

AULA?

COFFEE BREAK

10:00h


CHIP
-
SEQ

ANALYSIS

11:00h

AULA21

LUNCH

13:00h


GENOME

ASSEMBLY

15:00h

AULA4

COFFEE BREAK

16:3
0h


GENOME

ASSEMBLY

17:0
0h
-

18:3
0h


CLOSURE







LOCATION:


Aula d’Informàtica A
ntiga Hemeroteca

Universitat de Barcelona (UB)

Avinguda Diagonal 645

Barcelona


Metro Palau Reial

Line 3 (green)


PRICE:

200 euros/ person
(includes coffe break)