APPLICATIONS OF BIOINFORMATICS & PROTEOMICS/GENOMICS

vivaciousefficientΒιοτεχνολογία

1 Οκτ 2013 (πριν από 3 χρόνια και 11 μήνες)

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APPLICATIONS OF BIOINFORMATICS & PROTEOMICS/GENOMICS

SPRING 2012 SYLLABUS


1. Introduction To Genomics: Genome is not an instruction text but an unsupervised
operating system. (Alexei) (Jan 10th)


2.

Genome as an advanced Cellular Automaton. (Alexei) (Jan

12th)


3.

Organization and structure of the Human genome. (Alexei) (Jan 17th)


4. Complex hierarchy of non
-
randomness in the human genome. (Alexei) (Jan 19th)


5. Codon bias puzzle. What forces have created unequal codon frequencies? (Alexei)
(Jan 24th)


6. INTRONS: structure, function, and evolution.

(Alexei) (Jan 26th)


7
-
8. Single
-
Nucleotide Polymorphism (SNP) (John Gray) (Jan 31st and Feb 02nd )


9. Introduction to computational algorithms for gene prediction.

(Alexei) Feb 07th



10
-
11. Advanced gen
e predictions.

Basics on Support Vector Machines (Sam Shepard)
Feb 09th

and Feb 14th


12. Bacterial Genomics (Robert Blumenthal) Feb 16th


13. Transcription factor binding sites (Robert Trumbly) Feb 21st


14. Genomic Entropy. Origin of novel genes.

Pros

and cones of genomic mutations.
(Alexei) Feb 23rd



15.

Recombination and large rearrangements in the human genome. (Alexei)

Feb 28th


Take
-
home exam March 01st



SPRING BREAK March 05
-
11


16.

Gene arrays (Douglas Leaman) March 13th


17.

Data Mining i
n Bioinformatics (Sadik Khuder) March 15th


18. Cluster Analysis in Bioinformatics (Sadik Khuder) March 20th


19. Pattern Recognition in Bioinformatics (Sadik Khuder) March 22nd


20. Gene Regulatory Network (Sadik Khuder) March 27th


21.

Profound differen
ces between DNA and RNA molecules. Introduction to RNA World.
(Alexei) March 29th



22. Small non
-
coding RNA. Part 1: snoRNA (Alexei) (Apr 03rd)


23. Small non
-
coding RNA. Part 2: microRNA, siRNA, piRNA (Alexei) (Apr 05th)


24. Long non
-
coding RNA (Alexei)

(Apr 10th)


25. Advanced Proteomics. LAB (Wendell Griffin) (Apr 12th)


26. Glycan Analysis, Imaging, and Biomarker Discovery by MALDI
-
MS (Dragan Isailovic)
(Apr 17th)


27
-
28.

Advanced Molecular Phylogenetics (Scott Rogers) (Apr 19th

and (Apr 24th)


29.
Vacant (Apr 26th)


Final exam

May 01st