Introducing Genomics into the High School Classroom

throneharshΒιοτεχνολογία

2 Οκτ 2013 (πριν από 3 χρόνια και 2 μήνες)

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GENI
-
science.org



Introducing

Genomics into the High School Classroom

BioPharaceutical Technology Center Institute



BTCI.org


9:00
-
9:15

Introduction

and
Overview
of Workshop Activities

9:15
-
9:5
5


Genome Sequencing


-

How it is done.



Sanger Dideoxy Sequencing



454/Ion
Torrent




Illumina



PacBio



NanoPore


10:0
5
-
11:05


B
i
oi
nformatics

-

Genomes and Genomics:
Becoming

comfortable wandering
around a genome
.



NCBI: An outstanding, free, online resource for bioinformatics.

How do I get


there?



FASTA file format



BLAST: W
hat it does, how it does it & understanding its importance to



bioinformatics.



rDNA: A universal gene set used for identification of organisms. Tree of Life.



PFAM: Motifs and protein family identification



Automated Annotation



Genome Viewer (example: NCBI)


11:15
-
11:50


Bioinformatics
Active Learning



Hands on:

rDNA



Hands on:

BLAST



Hands on:

PFAM


12:00
-
12:30

Lunch and General Questions


12:30
-
1:40

Introduction to Online Tools
for Genomics Education

12:30
-
1:20

IMG
-
ACT
and the JGI Toolset

-

Gene and Pathway Annotation by Students



How to setup a class
.




How to assign a gene to annotate



Hands on:

Analyze the
proC

genes.



Assign a Pathway Analysis



Hands on:
Analyze the Proline Pathway.


1:40
-
2:50

GENI Project Wet Lab
-

Functional Genomics



GENI Collaborative Tool Concept
-

What GENI can do.



Hands on
:

GENI Tour


2:50
-
3:50

DNA Subway

(as

time permits)



Automated Eukaryotic Genome Annotation



Hands on
:

Annotate the Zea maize
proC

gene



Sequence Alignment and Phylogenetic

Analysis



Hands on
:

Compare the
proC

genes of monocots


3:50
-
4:00

Q & A Wrap
-
Up