WSU Bioinformatics Core Microarray Analysis

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1 Οκτ 2013 (πριν από 3 χρόνια και 2 μήνες)

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WSU Bioinformatics Core Microarray Analysis


We are here to assist you with your initial microarray analysis, any advanced gene
searches or analysis must be completed by individual labs.


Name of Project:____________________________________________________
______

PI Name:__________________________


Number of Experiments:__________

Contact Info:_______________________


Number of Data Files:____________


Analysis to be performed (Please check all that apply):




Extraction of Raw Data from CAB files.



Import Data

into GCOS



Analysis with GCOS

o

Scaling Factor: ___________

o

Report: Yes / No

o

Format for analyzed data (i.e. Excel):___________________



Analysis with Genespring

o

Experiment Name:_______________________

o

If 2 color plate, what is the format:_____________________
___________

o

Filtering:



Filter on P, A, M call:________________



Filter on Expression:_________________



Filter on Fold Change:________________



Filter on Confidence (t
-
test) p
-
value < ___________________



Anova



One
-
way p
-
value<__________________



Two
-
way p
-
valu
e<__________________

o

Gene Lists:

____________________________________________________________
____________________________________________________________
____________________________________________________________
___________________________________________
_________________

o

Condition List

o

Format of End Data: __________________________________________
___________________________________________________________